ProtDCal

Input file(s)*

File(s) must contain .pdb or .fasta extension

Input file (only for pairwise descriptors)

File must contain .ppi extension

Standardized Shannon's Entropy (sSE)

Compute sSE to allow distribution plots and descriptors selection (this applies for more than one instance).

Input file (optional)

.proj or .idl extension. See help

Indices:

Topological cutoff for contacts (t_cont)

Spacial cutoff for contacts (s_cont)

Topographic root (n)

Distance cutoff for hydrophilic groups (dHSG) [7.6-10.6]

Cutoff of surface area % (A%)

Quantity of decimals numbers

Vicinity operators:

Topological distance cutoff for Auto-correlation and Gravitational vicinity operator (K)

Maximum topological distance between terminal aa in the sequence windows of the Kier Hall vicinity operator (subG)

Aggregation Operators:

Number of bins Information Theory-based for aggregation operators (bins)

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